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Development and applications of functional gene microarrays in the analysis of the functional diversity, composition, and structure of microbial communities

Zhili HE, Joy D. VAN NOSTRAND, Ye DENG, Jizhong ZHOU

Frontiers of Environmental Science & Engineering 2011, Volume 5, Issue 1,   Pages 1-20 doi: 10.1007/s11783-011-0301-y

Abstract: Functional gene arrays (FGAs) are a special type of microarrays containing probes for key genes involvedin microbial functional processes, such as biogeochemical cycling of carbon, nitrogen, sulfur, phosphorusSeveral generations of GeoChip have been developed and applied to investigate the functional diversity, composition, structure, function, and dynamics of a variety of microbial communities from differenthuman health, environmental restoration, and ecological theories and to link the microbial community structure

Keywords： functional gene arrays (FGAs)     GeoChip     microbial communities     functional diversity/composition/structure    

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Effect of salinity on community structure and naphthalene dioxygenase gene diversity of a halophilic

Tingting Fang, Ruisong Pan, Jing Jiang, Fen He, Hui Wang

Frontiers of Environmental Science & Engineering 2016, Volume 10, Issue 6, doi: 10.1007/s11783-016-0888-0

Abstract: Various salinities affected the PAH-biodegrading community structure.analyze the effect of salinity on polycyclic aromatic hydrocarbons (PAHs) biodegradation, community structureand naphthalene dioxygenase gene ( ) diversity of a halophilic bacterial consortium with the denaturingWe concluded that salinity greatly affected halophilic bacterial community structure and also the functional

Keywords： Phenanthrene     Halophilic bacteria     Gene diversity     Naphthalene dioxygenase genes    

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Genetic diversity and population structure of indigenous chicken breeds in South China

Xunhe HUANG,Jinfeng ZHANG,Danlin HE,Xiquan ZHANG,Fusheng ZHONG,Weina LI,Qingmei ZHENG,Jiebo CHEN,Bingwang DU

Frontiers of Agricultural Science and Engineering 2016, Volume 3, Issue 2,   Pages 97-101 doi: 10.15302/J-FASE-2016102

Abstract: South China and two commercial breeds were genotyped for 26 microsatellites to investigate the genetic diversityand population structure.Higher genetic diversity was revealed in the indigenous chicken breeds rather than in the commercialThe population structure of these indigenous chicken breeds could be explained by their geographical

Keywords： microsatellites     genetic diversity     population structure     indigenous chicken     South China     conservation    

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Phylogenetic diversity of NO reductases, new tools for monitoring, and insights into NO production in

Frontiers of Environmental Science & Engineering 2022, Volume 16, Issue 10, doi: 10.1007/s11783-022-1562-3

Abstract:

● 548 representative nor genes were collected to create complete phylogenetic trees.

Keywords： N2O     Greenhouse gas     NO reductase     NO dismutase     Primer     Crystal structure    

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Changes in structure and functional properties of whey proteins induced by high hydrostatic pressure:

Xiaoming LIU, Jia NING, Stephanie CLARK,

Frontiers of Chemical Science and Engineering 2009, Volume 3, Issue 4,   Pages 436-442 doi: 10.1007/s11705-009-0251-0

Abstract: This review covers the research conducted to understand the effect of HHP on structure and functionalpressure-induced changes in -lactoglobulin and -lactabumin is also discussed and how they related to functional

Keywords： -lactoglobulin     processing     functional     alternative technology     environmental    

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CROP DIVERSITY AND SUSTAINABLE AGRICULTURE: MECHANISMS, DESIGNS AND APPLICATIONS

Frontiers of Agricultural Science and Engineering 2021, Volume 8, Issue 3,   Pages 359-361 doi: 10.15302/J-FASE -2021417

Abstract: The global crop diversity has declined in past decades.

Crop species diversity at a national scale was identified as one of the most important factorsA group of long-term field experiments demonstrated that crop diversity also stabilizes temporal grainTherefore, maintaining crop diversity at both national and field levels is of considerable importance

Crop diversity includes temporal (crop rotation) and spatial diversity (e.g., intercropping,

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Distribution of phytoplankton community and its influence factors in an urban river network, East China

Ling Sun, Hui Wang, Yuanqing Kan, Shiliang Wang

Frontiers of Environmental Science & Engineering 2018, Volume 12, Issue 6, doi: 10.1007/s11783-018-1062-7

Abstract:

Effects of urban river conditions on phytoplankton community were investigated.

Nitrate utilization and hydrodynamic condition affected phytoplankton distribution.

A winter bloom was induced by abundant ammonia, total phosphorus and organic matters.

The diatoms and euglenoids dominated in an urban beheaded river ecosystem.

Keywords： Phytoplankton composition     Spatiotemporal distribution     Functional groups     Nitrate nitrogen     Winter bloom    

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Methanogenic community structure in simultaneous methanogenesis and denitrification granular sludge

Yujiao Sun, Juanjuan Zhao, Lili Chen, Yueqiao Liu, Jiane Zuo

Frontiers of Environmental Science & Engineering 2018, Volume 12, Issue 4, doi: 10.1007/s11783-018-1067-2

Abstract:

• UASB with SMD granules was operated with high removal efficiency of COD and NO3--N.

• Methanosaetaceae was absolute predominant methanogen in SMD granules.

• The methanogen quantity and activity decreased as C/N decreased from 20:1 to 5:1.

• Bacterial community succession happened with C/N decreasing.

Keywords： Simultaneous methanogenesis and denitrification (SMD)     Methanogens     Community structure     Diversity index    

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Laser interference fabrication of large-area functional periodic structure surface

Lei WANG, Zi-Han WANG, Yan-Hao YU, Hong-Bo SUN

Frontiers of Mechanical Engineering 2018, Volume 13, Issue 4,   Pages 493-503 doi: 10.1007/s11465-018-0507-9

Abstract:

Functional periodic structures have attracted significant interest due to their natural capabilitiesSeveral technologies are used for the fabrication of these functional structures.Here, we reviewed the work on laser interference fabrication of large-area functional periodic structuresfour-beam interference and multi-exposure of two-beam interference were emphasized for their setup, structurediversity, and various applications for antireflection, self-cleaning, and superhydrophobicity.

Keywords： laser interference     four-beam interference     multi-exposure of two-beam interference     additive fabrication    

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Functional characterization of a thermostable methionine adenosyltransferase from

Yanhui Liu,Biqiang Chen,Zheng Wang,Luo Liu,Tianwei Tan

Frontiers of Chemical Science and Engineering 2016, Volume 10, Issue 2,   Pages 238-244 doi: 10.1007/s11705-016-1566-2

Abstract: MATTt (a thermostable methionine adenosyltransferase from HB27) was overexpressed in and purified using Ni-NTA affinity column. The enzymatic activity of MATTt was investigated in a temperature range from 30 °C to 90 °C, showing that MATTt exhibited a high enzymatic activity and good thermostability at 80 °C. Circular dichroism spectra reveals that MATTt contains high portion of -sheet structures contributing to the thermostability of MATTt. The kinetic parameter, is 4.19 mmol/L and 1.2 mmol/L for ATP and methionine, respectively. MATTt exhibits the highest enzymatic activity at pH 8. Cobalt (Co ) and zinc ion (Zn ) enhances remarkably the activity of MATTt compared to the magnesium ion (Mg ). All these results indicated that the thermostable MATTt has great potential for industry applications.

Keywords： ion-preference     methionine adenosyltransferase     secondary structure     thermostability     Thermus thermophilus    

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Fungal diversity and its mechanism of community shaping in the milieu of sanitary landfill

Frontiers of Environmental Science & Engineering 2021, Volume 15, Issue 4, doi: 10.1007/s11783-020-1370-6

Abstract:

• Ascomycota was the predominant phylum in sanitary landfill fungal communities.

Keywords： Sanitary landfill     Fungal community     Diversity     Saprotroph     Physical habitat     Environmental factor    

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Microbial community structure in different wastewater treatment processes characterized by single-strand

ZHAO Yangguo, WANG Aijie, REN Nanqi, ZHAO Yan

Frontiers of Environmental Science & Engineering 2008, Volume 2, Issue 1,   Pages 116-121 doi: 10.1007/s11783-008-0018-8

Abstract: understand the relationship between the structures and the status of processes, the microbial community diversityThe diversity of microbial populations was correlated with the complexity of organic contaminants inChinese traditional medicine wastewater contained more complex organic components; hence, the population diversityCompared with the strain bands in a simulated community, the relative proportion of some functional microbialdifference in microbial community structures in wastewater treatment processes, monitor some of the functional

Keywords： technique single-strand     proportion     bioreactor     community diversity     fingerprinting technique    

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Latest advances in ionic liquids promoted synthesis and application of advanced biomass materials

Frontiers of Chemical Science and Engineering 2023, Volume 17, Issue 7,   Pages 798-816 doi: 10.1007/s11705-023-2316-x

Abstract: The development of biomass materials is booming and advanced biomass materials with various functional

Keywords： biomass materials     functional materials     ionic liquids     synthesis     structure-property relationship    

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“Composition” and regularisation of architectural production in contemporary China

Hua LI

Frontiers of Structural and Civil Engineering 2010, Volume 4, Issue 4,   Pages 465-473 doi: 10.1007/s11709-010-0097-z

Abstract: The purpose of this paper is to explore how the “Beaux-Arts” “composition” sustained the constitution“Composition”, a key technique of the “Beaux-Arts” system, is not a simple act of “putting elements togetherThrough analysing the structure of three “textbooks” published in the early 1980s, this paper examines

Keywords： composition     “Beaux-Arts”     regulate     architectural production    

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Calorie restriction and its impact on gut microbial composition and global metabolism

Xiaojiao Zheng, Shouli Wang, Wei Jia

Frontiers of Medicine 2018, Volume 12, Issue 6,   Pages 634-644 doi: 10.1007/s11684-018-0670-8

Abstract: In the present review, we focus on the general effect of CR on gut microbiota composition and globalThus, improved gut microbiota composition and metabolome are potential biomarkers for determining the

Keywords： caloric restriction     gut microbiota     metabolome    

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Title Author Date Type Operation

Development and applications of functional gene microarrays in the analysis of the functional diversity, composition, and structure of microbial communities

Zhili HE, Joy D. VAN NOSTRAND, Ye DENG, Jizhong ZHOU

Journal Article

Effect of salinity on community structure and naphthalene dioxygenase gene diversity of a halophilic

Tingting Fang, Ruisong Pan, Jing Jiang, Fen He, Hui Wang

Journal Article

Genetic diversity and population structure of indigenous chicken breeds in South China

Xunhe HUANG,Jinfeng ZHANG,Danlin HE,Xiquan ZHANG,Fusheng ZHONG,Weina LI,Qingmei ZHENG,Jiebo CHEN,Bingwang DU

Journal Article

Phylogenetic diversity of NO reductases, new tools for monitoring, and insights into NO production in

Journal Article

Changes in structure and functional properties of whey proteins induced by high hydrostatic pressure:

Xiaoming LIU, Jia NING, Stephanie CLARK,

Journal Article

CROP DIVERSITY AND SUSTAINABLE AGRICULTURE: MECHANISMS, DESIGNS AND APPLICATIONS

Journal Article

Distribution of phytoplankton community and its influence factors in an urban river network, East China

Ling Sun, Hui Wang, Yuanqing Kan, Shiliang Wang

Journal Article

Methanogenic community structure in simultaneous methanogenesis and denitrification granular sludge

Yujiao Sun, Juanjuan Zhao, Lili Chen, Yueqiao Liu, Jiane Zuo

Journal Article

Laser interference fabrication of large-area functional periodic structure surface

Lei WANG, Zi-Han WANG, Yan-Hao YU, Hong-Bo SUN

Journal Article

Functional characterization of a thermostable methionine adenosyltransferase from

Yanhui Liu,Biqiang Chen,Zheng Wang,Luo Liu,Tianwei Tan

Journal Article

Fungal diversity and its mechanism of community shaping in the milieu of sanitary landfill

Journal Article

Microbial community structure in different wastewater treatment processes characterized by single-strand

ZHAO Yangguo, WANG Aijie, REN Nanqi, ZHAO Yan

Journal Article

Latest advances in ionic liquids promoted synthesis and application of advanced biomass materials

Journal Article

“Composition” and regularisation of architectural production in contemporary China

Hua LI

Journal Article

Calorie restriction and its impact on gut microbial composition and global metabolism

Xiaojiao Zheng, Shouli Wang, Wei Jia

Journal Article